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XSB1111 : vimentin [Bos taurus]

[ CaMP Format ]

This entry is computationally expanded from SB0037

* Basic Information

OrganismBos taurus (cattle)
Protein Namesvimentin
Gene NamesVIM; vimentin
Gene Locus13q16-q17; chromosome 13
GO FunctionNot available
Entrez Protein Entrez Nucleotide Entrez Gene UniProt OMIM HGNC HPRD KEGG
NP_776394 NM_173969 280955 P48616 N/A N/A N/A bta:280955

* Information From OMIM

Not Available.

* Structure Information

1. Primary Information

Length: 466 aa

Average Mass: 53.728 kDa

Monoisotopic Mass: 53.695 kDa

2. Domain Information

Annotated Domains: interpro / pfam / smart / prosite

Computationally Assigned Domains (Pfam+HMMER):

domain namebeginendscoree-value
Filament_head 1. 6101121.23.3e-33
--- cleavage 91 (inside Filament_head 6..101) ---
Filament 1. 102410610.61.6e-180
--- cleavage 264 (inside Filament 102..410) ---

3. Sequence Information

Fasta Sequence: XSB1111.fasta

Amino Acid Sequence and Secondary Structures (PsiPred):

4. 3D Information

Not Available.

* Cleavage Information

2 [sites]

Cleavage sites (±10aa)


Asp264 Leu

P10 P9 P8 P7 P6 P5 P4 P3 P2 P1
P1' P2' P3' P4' P5' P6' P7' P8' P9' P10'

Sequence conservation (by blast)


Ala91 Ile

P10 P9 P8 P7 P6 P5 P4 P3 P2 P1
P1' P2' P3' P4' P5' P6' P7' P8' P9' P10'

Sequence conservation (by blast)

* References

[PubMed ID: 16876394] Blain EJ, Gilbert SJ, Hayes AJ, Duance VC, Disassembly of the vimentin cytoskeleton disrupts articular cartilage chondrocyte homeostasis. Matrix Biol. 2006 Sep;25(7):398-408. Epub 2006 Jun 18.

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