logo CaMPDB: Calpain for Modulatory Proteolysis Database

XSB2817 : calpain, small subunit 1 [Sus scrofa]

[ CaMP Format ]

This entry is computationally expanded from SB0017

* Basic Information

OrganismSus scrofa (pig)
Protein NamesCalpain small subunit 1; CSS1; Calcium-dependent protease small subunit 1; Calcium-dependent protease small subunit; CDPS; Calpain regulatory subunit; Calcium-activated neutral proteinase small subunit; CANP small subunit; calpain; small subunit 1; calpain I light subunit
Gene NamesCAPNS1; CAPN4; calpain, small subunit 1
Gene LocusNot available
GO FunctionNot available
Entrez Protein Entrez Nucleotide Entrez Gene UniProt OMIM HGNC HPRD KEGG
NP_999483 NM_214318 397587 CPNS1_PIG N/A N/A N/A ssc:397587

* Information From OMIM

Not Available.

* Structure Information

1. Primary Information

Length: 266 aa

Average Mass: 28.068 kDa

Monoisotopic Mass: 28.051 kDa

2. Domain Information

Annotated Domains: interpro / pfam / smart / prosite

Computationally Assigned Domains (Pfam+HMMER):

domain namebeginendscoree-value
Rick_17kDa_Anti 1. 1558-16.89
MazG 1. 82133-27.13.4
--- cleavage 139 ---
efhand 1. 14116918.40.03
efhand 2. 17119916.50.11
efhand 3. 2362638.22.7

3. Sequence Information

Fasta Sequence: XSB2817.fasta

Amino Acid Sequence and Secondary Structures (PsiPred):

4. 3D Information

Known Structures in PDB: 1ALV (X-ray; 190 A; A/B=94-266), 1ALW (X-ray; 203 A; A/B=94-266), 1NX0 (X-ray; 230 A; A/B=94-266), 1NX1 (X-ray; 200 A; A/B=94-266), 1NX2 (X-ray; 220 A; A=94-266), 1NX3 (X-ray; 245 A; A=94-266)

* Cleavage Information

1 [sites]

Cleavage sites (±10aa)


Ile139 Asp

P10 P9 P8 P7 P6 P5 P4 P3 P2 P1
P1' P2' P3' P4' P5' P6' P7' P8' P9' P10'

Sequence conservation (by blast)

* References

[PubMed ID: 12744726] Martins-Wess F, Milan D, Drogemuller C, Vobeta-Nemitz R, Brenig B, Robic A, Yerle M, Leeb T, A high resolution physical and RH map of pig chromosome 6q1.2 and comparative analysis with human chromosome 19q13.1. BMC Genomics. 2003 May 13;4(1):20. Epub 2003 May 13.

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